[AJ]:: Generalize explicit formulation to rectilinear grids. Currently only supports Cartesian grids.

DOC need to be completed on this point

documentation

Module doc_discretization_node_level_schemes

Use the type_discrete_stencil for all submodule

Module doc_finite_differences_schemes

MCO: correct this depracated documentation If you have a particular numerical scheme that you want to implement, you should follow the main scheme_builder_non_uniform interface. To do so, simply write a function that simply:

define the fd_scheme's boundaries (thanks to the fd_scheme%declare_stencil member routine)
fill the fd_scheme%stencilweight array
returns the fd_scheme

Module doc_point_interpolation

MCO: do a proper integration of "Lagrange" point interpolation in the new framework. But before I need to test for efficiency matters.

Page How to simulate with adaptative time steps

Implement the same keyword for diffusion equation.

Module implicit_discretization

MCO update the above documentation

Module io_read_global_cell_file

do the routine with MPI IO

Subprogram mod_add_cell_diffusion_term_centered_o2::add_cell_diffusion_term_centered_o2 (matrix, flux_coef, equation_stencil, equation_ls_map)

check order with irregular grids

Subprogram mod_add_face_bc_tangent::add_face_bc_tangent (matrix, rhs, boundary_condition, face_equation_stencil, face_equation_ls_map)

check for irregular mesh

Subprogram mod_add_face_bc_tangent_noghost::add_face_bc_tangent_noghost (matrix, rhs, boundary_condition, face_equation_stencil, face_equation_ls_map)

check for irregular mesh

Subprogram mod_apply_cell_diffusion_scheme::apply_cell_diffusion_o2_centered_scheme (face_diffusion_coefficient, matrix_line, ns, i, j, k, extra_inside_gradient_coef2)

check order with irregular grids

Subprogram mod_arrays::is_in_array (val, array)

replace this routine by the intrinsic Fortran procedure 'findloc'

Subprogram mod_compute_cell_advection_term_exp_semi_lagrangian::compute_cell_advection_term_exp_semi_lagrangian (velocity, time_step, scalar, flux_type, directions, divut)

MCO: 3rd dimension

MCO: deal with boundaries

MCO: correct with reconstruction of the field

MCO: question the precision with Eulerian vs RK schemes

MCO: deal with splitted method (with "directions")

Subprogram mod_compute_cell_cons_advection_term_exp_generic_weno::compute_cell_advection_term_explicit_weno3_fd (velocity, scalar, divut)

[AJ]: Generalize for rectilinear grids. Only supports Cartesian grids.

Subprogram mod_compute_cell_cons_advection_term_exp_generic_weno::compute_cell_advection_term_explicit_weno5_fd (velocity, scalar, divut)

[AJ]: Generalize for rectilinear grids. Only supports Cartesian grids.

Subprogram mod_compute_cell_diffusion_term_explicit_centered::compute_cell_diffusion_term_explicit_centered_o2 (div_grad_phi, phi, flux_coef)

check order with irregular grids

Subprogram mod_compute_cell_diffusion_term_explicit_centered::compute_cell_diffusion_term_explicit_centered_o4 (div_grad_phi, phi, flux_coef)

[AJ] Generalize \( 4^{th} \) order scheme for rectilinear grids.

Subprogram mod_compute_div_u_psi_term_explicit_generic_fast_weno::compute_div_u_psi_term_explicit_generic_fast_weno (psi, velocity, dt, flux_type, directions, divupsi, weno_scheme_backward, weno_scheme_forward)

MCO: use the mean face value for the velocity at orthogonal faces

Subprogram mod_compute_div_u_psi_term_explicit_generic_fast_weno::compute_div_u_psi_term_generic_fast_weno_godunov (psi, velocity, dt, flux_type, directions, divupsi, weno_scheme_backward, weno_scheme_forward)

MCO: use the mean face value for the velocity at orthogonal faces

Subprogram mod_compute_div_u_psi_term_explicit_generic_fast_weno::compute_div_u_psi_term_generic_fast_weno_upwind (psi, velocity, dt, flux_type, directions, divupsi, weno_scheme_backward, weno_scheme_forward)

MCO: use the mean face value for the velocity at orthogonal faces

Subprogram mod_compute_div_u_psi_term_explicit_generic_weno::compute_div_u_psi_term_explicit_generic_weno (psi, velocity, dt, flux_type, directions, divupsi, weno_scheme_backward, weno_scheme_forward)

MCO: use the mean face value for the velocity at orthogonal faces

Subprogram mod_compute_div_u_psi_term_explicit_generic_weno::compute_face_advection_term_explicit_weno3_fd (velocityl, velocityr, advec_explicit)

[AJ]: Generalize for rectilinear grids. Only supports Cartesian grids.

Subprogram mod_compute_div_u_psi_term_explicit_generic_weno::compute_face_advection_term_explicit_weno5_fd (velocityl, velocityr, advec_explicit)

[AJ]: Generalize for rectilinear grids. Only supports Cartesian grids.

Subprogram mod_compute_stress_tensor::compute_stress_tensor (stress_tensor, velocity, viscosity)

extrapolation on ghost boundary cells

Subprogram mod_compute_stress_tensor_divergence::compute_stress_tensor_divergence (stress_tensor, stress_tensor_divergence)

extrapolation on ghost boundary cells

Subprogram mod_discretize_cell_advection_term::discretize_cell_advection_term (matrix, coefficient, divergence, equation_advection_term_discretization_type, equation_advection_term_scheme, equation_has_div_u_advection_term, equation_has_immersed_boundaries, equation_ib_has_one_sided_inner_discretization, equation_ib_inner_discretization_order, equation_stencil, time_step_n, time_step, equation_cfl_cell_advection, scalar_field_n, equation_explicit_time_order_discretization, flux_type, boundary_condition, equation_ls_map, velocity_nm1, velocity_n, velocity, work_cell_field, equation_advection_term_splitting_scheme, equation_splitting_time_coef, directional_splitting, ibc_variable, equation_isd_target)

Consider velocity interpolation when STRETCHED RECTILINEAR MESH are used.

Module mod_discretize_cell_explicit_diffusion_term_o2

to be improved for 1st/2nd order ibm.

Subprogram mod_explicit_add_cell_bc::explicit_add_cell_bc (scalar, boundary_condition)

MCO: do better extrapolation (not sequential)

Subprogram mod_explicit_add_cell_bc_nh::explicit_add_cell_bc_nh (scalar)

MCO: unalloc bc_value

Subprogram mod_extrapolate_cells_outside_boundaries::extrapolate_cells_outside_boundaries (field, fd_order)

MCO Deal with corners (currently covered by other dimensions)

Subprogram mod_extrapolate_cells_outside_boundaries::extrapolate_cells_outside_boundaries_generic (field, backward_scheme, forward_scheme)

MCO Deal with corners (currently covered by other dimensions)

Subprogram mod_extrapolate_faces_outside_boundaries::extrapolate_faces_outside_boundaries (field, fd_order)

MCO Deal with corners (currently covered by other dimensions)

Subprogram mod_extrapolate_faces_outside_boundaries::extrapolate_faces_outside_boundaries_generic (field, backward_scheme, forward_scheme)

MCO Deal with corners (currently covered by other dimensions)

Subprogram mod_extrapolate_faces_to_faces::extrapolate_faces_to_faces (field, scheme, axis, index)

MCO evaluate the efficiency of the use of field(:,index+schemedir,:)

Subprogram mod_finalize_cell_linear_system::finalize_cell_linear_system (matrix, rhs, stencil_size, equation_ls_map)

improve unused nodes values

Subprogram mod_finalize_face_linear_system::finalize_face_linear_system (matrix, rhs, stencil_size, equation_face_ls_map)

improve unused nodes values (extrapolation)

Module mod_finite_differences_scheme_fifth_o1

MCO: introduce variable steps

Module mod_finite_differences_scheme_fifth_o2

MCO: introduce variable steps

Module mod_finite_differences_scheme_first_o5

MCO: introduce variable steps

Module mod_finite_differences_scheme_first_o6

MCO: introduce variable steps

Subprogram mod_finite_differences_scheme_fourth_o1::t_fd_scheme_fourth_o1_backward_fill (self, steps)

MCO: implement the variable step formula

Subprogram mod_finite_differences_scheme_fourth_o1::t_fd_scheme_fourth_o1_forward_fill (self, steps)

MCO: implement the variable step formula

Module mod_finite_differences_scheme_fourth_o2

MCO: introduce variable steps

Module mod_finite_differences_scheme_fourth_o3

MCO: introduce variable steps

Module mod_finite_differences_scheme_second_o5

MCO: introduce variable steps

Module mod_finite_differences_scheme_sixth_o1

MCO: introduce variable steps

Subprogram mod_finite_differences_scheme_third_o2::t_fd_scheme_third_o2_backward_fill (self, steps)

MCO: implement the variable step formula

Subprogram mod_finite_differences_scheme_third_o2::t_fd_scheme_third_o2_forward_fill (self, steps)

MCO: implement the variable step formula

Module mod_finite_differences_scheme_third_o3

MCO: introduce variable steps

Module mod_finite_differences_scheme_third_o4

MCO: introduce variable steps

Module mod_generic_list

documentation

Module mod_generic_stack

documentation

Subprogram mod_gradient_operator_cell_to_face::gradient_operator_cell_to_face (gradient, array, order)

MCO: deal with point/mean quantity

Subprogram mod_interpolate_scalar_cell_to_vertices::interpolate_scalar_cell_to_vertices (field_cell, field_vertices, order)

deal with the boundaries (extrapolate?) With the index (i,j,k) corresponding to the intersection of cells (i+{0,1},j+{0,1},k+{0,1})

Subprogram mod_interpolate_scalar_cell_to_vertices::interpolate_scalar_cell_to_vertices_generic (field_cell, field_vertices, scheme)

deal with the boundaries (extrapolate?) With the index (i,j,k) corresponding to the intersection of cells (i+{0,1},j+{0,1},k+{0,1})

Subprogram mod_interpolate_vector_face_to_cell::interpolate_vector_face_to_cell_unit (velocity, i, j, k)

It does not seemed to be used anymore ?!! (not efficient routine ??)

Subprogram mod_interpolation_computer::int_weno_compute_from_array (scheme, int_step, step_array, array, index, fv)

MCO derivate from ext_scheme would be better

Subprogram mod_interpolation_weno_scheme_o5z::t_int_weno_scheme_o5z_backward_apply (self, step, steps, values)

MCO: compute the appropriate smoothness_indicator factors

MCO: compute the optimal gamma factors with "step"

Subprogram mod_interpolation_weno_scheme_o5z_reconstruction::t_int_weno_scheme_o5z_reconstruction_backward_apply_opt (self, step, steps, values)

MCO: compute the optimal gamma factors with variables steps

Subprogram mod_lsm_advect::levelset_advect (ls, dt, velocity_nm1, velocity_n, velocity_np1, dt_nm1, dt_n)

MCO: plug back refined grid (bnd cond not ready for it)

Subprogram mod_lsm_advect_eulerian_euler::levelset_advect_eulerian_weno5_nssp32 (levelset, velocity_nm1, velocity_n, velocity_np1, local_time, dt_nm1, dt_n, time_step)

MCO: the boundary conditions are at time \(t^n\), even during the RK integration!

Subprogram mod_lsm_band::compute_levelset_band (levelset_field, levelset_band, width)

Could be optimized by precomputing the corners values

Subprogram mod_lsm_cp_field::compute_closest_point_array (cp_array, ls, cp_rest)

MCO: now cp_rest can be safely removed!

: check this function for grid

Subprogram mod_lsm_curvature::compute_levelset_curvature_div_n (my_levelset, curvature)

MCO: find another solution for bndc

Subprogram mod_lsm_normal::compute_levelset_gradient_outline (my_levelset, gradient, order)

documentation missing

Subprogram mod_lsm_volume_fraction_bc::translate_vf_bc_to_ls_bc (phi, vf_boundary_condition, ls_boundary_condition)

MCO: deal with Neumann bndc (impose Dirichlet with distance function)

Subprogram mod_mpi_grid_info::grid_information ()

JPI: to document and to summarize?

Subprogram mod_mpi_localization::get_neighbor_id_containing_point (position)

Write the function answering the former note.

Subprogram mod_point_interpolation_field::reconstruct_face_field_comp (field, pos, order, comp)

MCO

Subprogram mod_point_interpolation_prepare::interpolation_set_stencil_centered (data, xxi, yyi, zzi, xo, yo, zo)

: Print a graceful exit message when nx == 1. Currently, it should produce an array overflow.

Subprogram mod_point_interpolation_prepare::interpolation_set_stencil_oriented (data, i_pi, j_pi, k_pi, tx, ty, tz)

: Treat domain boundaries.

Module mod_rec_d_point_lagrange_o1

MCO: For 2D and 3D: those are only for derivative in the x direction, we should do y and z too

Module mod_rec_d_point_lagrange_o2

MCO: For 2D and 3D: those are only for derivative in the x direction, we should do y and z too

Module mod_rec_d_point_lagrange_o3

MCO: For 2D and 3D: those are only for derivative in the x direction, we should do y and z too

Subprogram mod_staggered_indice_links::staggered_indice_links ()

finish documentation

Module type_edge_field

finish doc

Module type_face_field

finish doc

Module type_face_vector_gradient

finish doc

Module type_fv_flux

MCO: details needed here

Module type_int_fast_scheme

MCO: gfortran is making the code crash when using the inner compute_weights() method, while ifort is fine with it. For now, use a supplied procedure given to precompte(). When the problem is solved, switch back to overloaded compute_weights call, much more elegant.

Subprogram type_int_fast_scheme::t_int_fast_scheme_apply_dummy (self, values)

Throw exception

Subprogram type_int_point_1d::int_point_1d_construct (self, index_start, index_end)

MCO: bring back the "construct" function instead for more clarity

Subprogram type_int_point_weno_2d::int_point_weno_2d_interpolate (self, x, coordinates_x, coordinates_y, values, derivatives, cv_x, cv_y)

MCO: deal with reconstruction schemes for 2D

Subprogram type_int_point_weno_3d::int_point_weno_3d_interpolate (self, x, coordinates_x, coordinates_y, coordinates_z, values, derivatives, cv_x, cv_y, cv_z)

MCO: deal with reconstruction schemes for 3D

Subprogram type_levelset::levelset_constructor (self, parameters)

Treat periodic boundaries

Subprogram type_levelset::levelset_destructor (self)

MCO: with modern Fortran, it is no more necessary to unallocate the various arrays

Subprogram type_levelset::levelset_set (self, phi)

MCO: the function compute_initial_info() is not callable before the phase_advection_grid_volume is initialized, hence we cannot call it here when the LS is set by the UI!

Subprogram type_particle_list::t_particle_list_mpi_exchange (self)

This could be done with less memory usage by using a map of destination nodes or a real list of outgoing particles

Module type_stress_tensor

finish doc